PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0458s0240.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 333aa    MW: 36112.2 Da    PI: 8.6288
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0458s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.4e-3366122358
             ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                              v YkeClkNhAas Gg a+DGCgEfmp+++++  ++++lkCaACgCHRnFHRre++
  SapurV1A.0458s0240.1.p  66 VVSYKECLKNHAASFGGLALDGCGEFMPKSTATpQDPTSLKCAACGCHRNFHRREPS 122
                             689**************************9999999******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2267122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.1E-2867121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.20669120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-3069120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.4E-25190263IPR009057Homeodomain-like
SuperFamilySSF466891.28E-14191263IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-25201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTRKAMESTT SPHCITKSPE SDTDSETPLQ THLTKALSLT NGSFKTHQNH HLPPPPPPPP  60
PQQNMVVSYK ECLKNHAASF GGLALDGCGE FMPKSTATPQ DPTSLKCAAC GCHRNFHRRE  120
PSGPTATSTH MLPLPALNWT TSSSQSPGST SSGPASPASP SPQSFYPSAP HMLLSLSSGH  180
LDDTQLQKQG YSLAMTGPHG RKRARTKFSQ EQKEKMYLFA EKLGWRLLRG NNDRGVEEFC  240
SEIGVTRNIF KVWMHNNRSR KEKLNSSCGI NSSDKCGFNA TEEAGRDGAD NKGHSFSNSN  300
NGSNCDSFDR CQIESKVHVH GSMTPHGSSP SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-182022591874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485560.0EF148556.1 Populus trichocarpa x Populus deltoides clone WS0134_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315053.20.0hypothetical protein POPTR_0010s17650g
SwissprotQ9SEZ14e-57ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLB9HY080.0B9HY08_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-53zinc finger homeodomain 1